Multiple sequence alignment: methods and protocols

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Chapter "Alignment of Biological Sequences with Jalview" is available open access under a Creative Commons Attribution 4.0 International License via link.springer.com.

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Title Statements

Full title :Multiple sequence alignment : methods and protocols / edited by Kazutaka Katoh.

Summary

Chapter "Alignment of Biological Sequences with Jalview" is available open access under a Creative Commons Attribution 4.0 International License via link.springer.com.

Edition Statements

Publication Date:2021

Publication Statements

Publisher(s):Humana Press
Place of Publication:New York
Language:eng
Publication Date:2021

The Physical Object

Description:1 online resource (xiii, 321 pages) : : illustrations (some color)

Edition Identifiers

ISBN:9781071610367, 1071610368
DOI:10.1007/978-1-0716-1036-7
oclc:on1237370343
LC Classification:QH441
Dewey Decimal:572.8

The Clustal Omega Multiple Alignment Package -- Phylogeny-Aware Alignment with PRANK and PAGAN -- Fast and Accurate Multiple Sequence Alignment with MSAProbs-MPI -- Aligning Protein-Coding Nucleotide Sequences with MACSE -- Cooperation of Spalm and Prrn5 for Construction of Gene-Structure-Aware Multiple Sequence Alignment -- Multiple Sequence Alignment Computation using the T-Coffee Regressive Algorithm Implementation -- Multiple Sequence Alignment for Large Heterogeneous Datasets using SATé, PASTA, and UPP -- Sequence Comparison without Alignment: The SpaM Approaches -- Lamassemble: Multiple Alignment and Consensus Sequence of Long Reads -- Automated Removal of Non-Homologous Sequence Stretches with PREQUAL -- Analysis of Protein Intermolecular Interaction with MAFFT-DASH -- Mustguseal and Sister Web-Methods: A Practical Guide to Bioinformatic Analysis of Protein Superfamilies -- Alignment of Biological Sequences with Jalview -- Evolutionary Sequence Analysis and Visualization with Wasabi -- Seaview Version 5: A Multiplatform Software for Multiple Sequence Alignment, Molecular Phylogenetic Analyses, and Tree Reconciliation -- NCBI Genome Workbench: Desktop Software for Comparativ…