Phylogenomics: a primer

by DeSalle, Rob

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Title Statements

Full title :Phylogenomics : a primer / Rob DeSalle, Michael Tessler, Jeffrey Rosenfeld.

Edition Statements

Publication Date:©2021
Edition:Second edition

Publication Statements

Publisher(s):Garland Science/CRC Press
Place of Publication:Boca Raton, FL
Language:eng
Publication Date:©2021

The Physical Object

Description:xviii, 380 pages : : illustrations ; : 28 cm

Edition Identifiers

ISBN:9780367028497, 0367028492, 9780367028527, 0367028522
oclc:on1202421568
LC Classification:QH367.5
Dewey Decimal:572.8/38

Section I. Foundations of Phylogenomics. What is Phylogenomics? -- The Biology and Sequencing of Genetic Information: DNA, RNA, and Proteins -- Evolutionary Principles: Populations and Trees -- Section II. Data. Data Storage-The Basics -- Sequence Alignment and Searching Sequence Databases -- Multiple Alignments -- Genome Sequencing and Annotation -- Genomics Databases: Genomes and Transcriptomes -- Amplicon Databases: BoLD and Bacterial 16S rDNA Databases. Section III. Phylogenetic/Phylogenomic Analysis. Introduction to Tree Building -- Distance and Clustering -- Maximum Likelihood -- Search Strategies and Robustness -- Rate Heterogeneity, Long Branch Attraction, and Likelihood Models -- Bayesian Approaches in Phylogenetics -- Incongruence of Gene Trees -- Phylogenetic Programs and Websites. Section IV. Population Genomics. Population Genetics and Genomes -- Population Genomics Approaches -- Detecting Natural Selection: The Basics -- Refining the Approach to Natural Selection at the Molecular Level. Section V. Phylogenomics in Action. Constructing Phylogenomic Matrices -- Phylogenomics and the Tree of Life -- Comparative Genomics -- Environmental DNA (eDNA) -- Phylogenomic Approa…