Python for bioinformatics

by Bassi, Sebastian

Type Book

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Title Statements

Full title :Python for bioinformatics / Sebastian Bassi.

Edition Statements

Publication Date:2009.

Publication Statements

Publisher(s):Taylor & Francis
Place of Publication:Boca Raton
Language:eng
Publication Date:2009.

The Physical Object

Description:pages cm.

Edition Identifiers

ISBN:9781584889298, 1584889292
oclc:ocn464825353
LC Classification:QH324.2
Dewey Decimal:570.285

1. Introduction -- 2. First Steps with Python -- 3. Basic Programming: Data Types -- 4. Programming: Flow Control -- 5. Dealing with Files -- 6. Code Modularizing -- 7. Error Handling -- 8. Introduction to Object Orienting Programming (OOP) -- 9. Regular Expressions -- 10. Introduction to Biopython -- 11. Web Applications -- 12. Xml -- 13. Python and Databases -- 14. Collaborative Dovuloprneut: Vursion Control -- 15. Sequence Manipulation in Batch -- 16. Web Application for Filtering Vector Contamination -- 17. Searching for PCR Primers Using Primer3 -- 18. Calculating Melting Temperature from a Set of Primers -- 19. Filtering Out Specific Fields from a Genbank File -- 20. Converting XML BLAST File into HTML -- 21. Infering Splicing Sites -- 22. DNA Mutations with Restrictions -- 23. Web Server for Multiple Alignment -- 24. Drawing Marker Positions Using Data Stored in a Database -- A. Python and Biopython Installation -- B. Selected Papers.

C. Included DVD: Virtual Machine Installation and Use -- D. Python Language Reference -- E. Answers to Odd-Numbered Questions -- F. Python Style Guide.