Algebraic and Combinatorial Computational Biology

by Robeva, Raina

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Title Statements

Full title :Algebraic and Combinatorial Computational Biology

Edition Statements

Publication Date:2018.

Publication Statements

Publisher(s):Elsevier Science & Technology
Place of Publication:San Diego
Language:eng
Publication Date:2018.

Notes

Chapter 5: Modeling the Stochastic Nature of Gene Regulation With Boolean Networks

The Physical Object

Description:1 online resource (436 pages)

Edition Identifiers

ISBN:9780128140697, 0128140690
oclc:on1057677438
LC Classification:QH324.2
Dewey Decimal:570.1512

Front Cover; Algebraic and Combinatorial Computational Biology; Copyright; Contents; Contributors; Preface; Chapter 1: Multiscale Graph-Theoretic Modeling of Biomolecular Structures; 1.1 Introduction; 1.1.1 The Molecules of Life; 1.2 Graph Theory Fundamentals; 1.3 Modeling RNA Structure; 1.3.1 RNA Secondary Structure Features; 1.3.2 Tree and Dual Graph Models of RNA Secondary Structure; 1.3.2.1 RNA Tree Graphs; 1.3.2.2 Using Graph Statistics to Understand RNA Secondary Structure; 1.3.2.3 RNA Dual Graphs; 1.3.2.4 Online RNA Resources; 1.3.3 Homework Problems and Projects

1.4 RNA Structure and Matchings1.4.1 L & P Matchings; 1.4.2 The C & C Family; 1.4.3 Homework Problems and Projects; 1.5 Hierarchical Protein Models; 1.5.1 Weighted Graph Invariants; 1.5.2 Homework Problems and Projects; References; Further Reading; Chapter 2: Tile-Based DNA Nanostructures; 2.1 Introduction; 2.2 Laboratory Process; 2.3 Graph Theoretical Formalism and Tools; 2.3.1 Flexible Tiles; 2.3.2 Flexible Tiles, Unconstrained Case; 2.3.3 Flexible Tiles, Constrained Case; 2.3.4 The Matrix of a Pot; 2.4 Rigid Tiles; 2.5 Computation by Self-Assembly; 2.6 Conclusion

2.7 Resource MaterialsAcknowledgments; Referenc…