RNA bioinformatics

by Picardi, Ernesto

Type Book

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Full title :RNA bioinformatics / edited by Ernesto Picardi.

Summary

Advanced Design of Structural RNAs Using RNARedPrint -- Modeling and Predicting RNA Three-Dimensional Structures -- Motif Discovery from CLIP Experiments -- Profiling of RNA Structure at Single-Nucleotide Resolution Using nextPARS -- RNA Framework for Assaying the Structure of RNAs by High-Throughput Sequencing -- Using RNentropy to Detect Significant Variation in Gene Expression across Multiple RNA-Seq or Single Cell RNA-Seq Samples -- Statistical Modeling of High Dimensional Counts -- QuickIsoSeq for Isoform Quantification in Large-Scale RNA Sequencing -- Summarizing RNA-Seq Data or Differentially Expressed Genes Using Gene Set, Network or Pathway Analysis -- Computational Analysis of circRNA Expression Data -- Differential Expression Analysis of Long Non-Coding RNAs -- Micro-RNA Quantification, Target Gene Identification, and Pathway Analysis -- In Silico Analysis of MicroRNA Sequencing Data -- RNA Editing Detection in HPC Infrastructures -- .

Identification of Genes Post-Transcriptionally Regulated from RNA-Seq: The Case Study of Liver Hepatocellular Carcinoma -- Computational Analysis of Single Cell RNA-Seq Data -- Normalization of Single-Cell RNA-Seq Data -- Dimensionality Reduction of Single-Cell RNA-Seq Data -- Single-Cell RNA Sequencing Analysis: A Step-by-Step Overview -- RNA-Seq Data Analysis in Galaxy -- RAP: A Web Tool for RNA-Seq Data Analysis -- iDEP Web Application for RNA-Seq Data Analysis -- Exploring Non-Invasive Biomarkers with the miRandola Database: A Tool for Translational Medicine -- Database Resources for Functional Circular RNAs -- Databases for RNA Editing Collections -- MODOMICS: An Operational Guide to the Use of the RNA Modification Pathways Database -- MeT-DB V2.0: Elucidating Context-Specific Functions of N6-Methyl-Adenosine Methyltranscriptome -- WHISTLE: A Functionally Annotated High-Accuracy Map of Human m6A Epitranscriptome -- Transcript Identification through Long-Read Sequencing -- .

Transcript Isoform-Specific Estimation of Poly(A) Tail Length by Nanopore Sequencing of Native RNA -- Nanopore RNA Sequencing Analysis.