Computational methods for understanding riboswitches

by Burke-Aguero, Donald H. Chen, Shi-Jie

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Title Statements

Full title :Computational methods for understanding riboswitches / edited by Shi-Jie Chen and Donald H. Burke-Aguero.

Edition Statements

Publication Date:2015.

Publication Statements

Publisher(s):Elsevier/Academic Press
Place of Publication:Amsterdam [etc.]
Language:eng
Publication Date:2015.

Notes

Text in English. .

The Physical Object

Description:XVII, 403 str. : : ilustr. ; : 24 cm +

Edition Identifiers

ISBN:9780128014295, 0128014296
oclc:ocn911550474

Automated 3D RNA structure prediction using the RNAComposer method of riboswitches -- Modeling complex RNA tertiary folds with Rosetta -- Computational methods toward RNA structure prediction using coarse-grained and all-atom models -- Improving RNA secondary structure prediction with structure mapping data -- Computational prediction of riboswitch tertiary structures including pseudoknots by RAGTOP: a hierarchical graph sampling approach -- Using reweighted pulling simulations to characterize conformational changes in riboswitches -- Force field dependence of riboswitch dynamics -- Thermodynamic and kinetic folding of riboswitches -- Integrating molecular dynamics simulations with chemical probing experiments using SHAPE-FIT -- Using simulations and kinetic network models to reveal the dynamics and functions of riboswitches -- Computational methods for prediction of RNA interactions wiht metal ions and small organic ligands -- Computational prediction of riboswitches -- Computational and experimental studies of reassociating RNA/DNA hybrids containing split functionalities -- Multiscale methods for computational RNA enyzmology.