Thesiss

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Models of Internet routing are critical for studies of Internet security, reliability and evolution, which often rely on simulations of the Internet's routing system. Accurate models are difficult to build and suffer from a dearth of ground truth data, as ISPs often treat their …

Genome assembly is the process of merging fragments of DNA sequences produced by shotgun sequencing in order to reconstruct the original genome. It is complicated by repeated regions in genomes, sequencing errors, and experimental biases. Here we focus on our efforts to confront…

Data structures are vital entities that strongly impact the efficiency of several software applications. Compactness, predictable memory access patterns, and good temporal and spacial locality of the structure's operations are increasingly becoming essential factors in the selec…

Computing with words (CW) provides symbolic and semantic methodology to deal with imprecise information associated with natural language. The CW paradigm rooted in fuzzy logic, when coupled with an expert system, offers a general methodology for computation with fuzzy variables …

One of the hardest challenges in building a realistic Bayesian network (BN) model is to construct the node probability tables (NPTs). Even with a fixed predefined model structure and very large amounts of relevant data, machine learning methods do not consistently achieve great …