Phylogenomics: a primer

by DeSalle, Rob

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Title Statements

Full title :Phylogenomics : a primer / Rob DeSalle, Michael Tessler, Jeffrey A. Rosenfeld.

Edition Statements

Publication Date:2020
Edition:2nd edition

Publication Statements

Publisher(s):CRC Press
Place of Publication:Boca Raton
Language:eng
Publication Date:2020

Notes

Previous edition: 2013.

PEMP/EMEMreface /EM/PPEMAcknowledgements /EM/PBPSection I. Foundations of Phylogenomics/P/BP1. What is Phylogenomics? /PP2. The Biology and Sequencing of Genetic Information: DNA, RNA, and Proteins /PP3. Evolutionary Principles: Populations and Trees /PBPSection II. Data/P/BP4. Data Storage--The Basics /PP5. Sequence Alignment and Searching Sequence Databases /PP6. Multiple Alignments /PP7. Genome Sequencing and Annotation /PP8. Genomics Databases: Genomes and Transcriptomes /PP9. Amplicon Databases: BoLD and Bacterial 16S rDNA Databases /PBPSection III. Phylogenetic/Phylogenomic Analysis/P/BP10. Introduction to Tree Building /PP11. Distance and Clustering /PP12. Maximum Likelihood /PP13. Search Strategies and Robustness /PP14. Rate Heterogeneity, Long Branch Attraction, and Likelihood Models /PP15. Bayesian Approaches in Phylogenetics /PP16. Incongruence of Gene Trees /PP17. Phylogenetic Programs and Websites /PBPSection IV. Population Genomics/P/BP18. Population Genetics and Genomes /PP19. Population Genomics Approaches /PP20. Detecting Natural Selection: The Basics /PP21. Refining the Approach to Natural Selection at the Molecular Level /PBPSection V. Phylogenomics in Action/P/BP22. Constructing Phylogenomic Matrices /PP23. Phylogenomics and the Tree of Life /PP24. Comparative Genomics /PP25. Environmental DNA (eDNA) /PP26. Phylogenomic Approaches to Understanding Gene Function and Evolution /PIPIndex /P/IP/P.